CLUSTAL W (1.83) multiple sequence alignment 2nd-structure -----------aaaaaaaaaaaaaa----------bbbbbbbbbbbbbbbbbbbbbbbbb Protein1 ------------------------LSALFSFSWTTPILRKGYRHHLELSDIYQAPSADSA Protein2 ----------------------------LSFSWTTPILRKGYRHHLELSDIYQAPSSDSA Protein3 AQTALAGTPAPERPCRGRLWKRPALSPNFFSGWTRPILRKGYRQRLELSDIYQIPSVDSA : .** ********::******** ** *** 2nd-structure bbbbbbb------aaaaaaaaaaaa----------------------------------- Protein1 DHLSEKLEREWDREQASKKNPQLIHALRRCFFWRFLFYGILLYLGEVTKAVQPVLLGRII Protein2 DHLSEKLEREWDREQASKKKPQLIHALRRCFVWRFVFYGVLLYLGEVTKAVQPVLLGRII Protein3 DNLSEKLEREWDRELASKKNPKLINALRRCFFWRFMFYGIFLYLGEVTKAVQPLLLGRII *:************ ****:*:**:******.***:***::************:****** 2nd-structure --aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa Protein1 ASYDPENKVERSIAIYLGIGLCLLFIVRTLLLHPAIFGLHRIGMQMRTAMFSLIYKKTLK Protein2 ASYDPDNTEERSIAIYLGIGLCLLFIVRTLLLHPAIFGLHHIGMQMRIAMFSLIYKKTLK Protein3 ASYDPDNKEERSIAIYLGIGLCLLFIVRTLLLHPAIFGLHHIGMQMRIAMFSLIYKKTLK *****:*. *******************************:****** ************ 2nd-structure aaaaaaaaaaaaaaaaaaaaaaaaa----------bbbbbbbbbbbbbbbbbbbbbbbbb Protein1 LSSRVLDKISIGQLVSLLSNNLNKFDEGLALAHFIWIAPLQVTLLMGLLWDLLQFSAFCG Protein2 LSSRVLDKISIGQLISLLSNNLNKFDEGLALAHFIWIAPLQVVLLMGLLWDLLQFSAFCG Protein3 LSSRVLDKISIGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVALLMGLIWELLQASAFCG **************:*******************:*******.*****:*:*** ***** 2nd-structure b----------------------------------------------------------- Protein1 LGLLIILVIFQAILGKMMVKYRDQRAAKINERLVITSEIIDNIYSVKAYCWESAMEKMIE Protein2 LGLLIVLVIFQAILGKMMVKYRDKRAAKINERLVITSEVIDNIYSVKAYCWESAMEKIIE Protein3 LGFLIVLALFQAGLGRMMMKYRDQRAGKISERLVITSEMIENIQSVKAYCWEEAMEKMIE **:**:*.:*** **:**:****:**.**.********:*:** ********.****:** 2nd-structure -----bbbbbbbbbbbb------------------------------------------- Protein1 NLREVELKMTRKAAYMRFFTSSAFFFSGFFVVFLSVLPYTVINGIVLRKIFTTISFCIVL Protein2 SLREEELKMTRRSAYMRFFTSSAFFFSGFFVVFLSVLPYTVINGIVLRKIFTTISFCIVL Protein3 NLRQTELKLTRKAAYVRYFNSSAFFFSGFFVVFLSVLPYALIKGIILRKIFTTISFCIVL .**: ***:**::**:*:*.*******************::*:**:**************

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without secondary structure
with secondary structure, alpha helix =, beta sheet=
with secondary structure, alpha helix =, beta sheet=